STRINGSTRING
AGA84930.1 AGA84930.1 AGA85174.1 AGA85174.1 ligB ligB AGA84931.1 AGA84931.1 AGA84932.1 AGA84932.1 AGA84928.1 AGA84928.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
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Cooccurrence
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[Homology]
Score
AGA84930.1PFAM: Oxidoreductase FAD-binding domain; Ferric reductase like transmembrane component; Oxidoreductase NAD-binding domain. (443 aa)    
Predicted Functional Partners:
AGA85174.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; TIGRFAM: urea ABC transporter, urea binding protein.
   
    0.833
ligB
NAD-dependent DNA ligase; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.
       0.553
AGA84931.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
       0.518
AGA84932.1
Putative membrane protein; PFAM: ABC-2 type transporter.
       0.503
AGA84928.1
PFAM: Protein of unknown function (DUF1090).
       0.427
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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