STRINGSTRING
AGA85016.1 AGA85016.1 AGA85015.1 AGA85015.1 AGA85014.1 AGA85014.1 AGA85011.1 AGA85011.1 AGA85017.1 AGA85017.1 AGA85240.1 AGA85240.1 AGA87878.1 AGA87878.1 AGA85013.1 AGA85013.1 uppS uppS fni fni AGA87071.1 AGA87071.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGA85016.1Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase. (308 aa)    
Predicted Functional Partners:
AGA85015.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
 
 0.999
AGA85014.1
PFAM: Lycopene cyclase protein; TIGRFAM: lycopene cyclase family protein; lycopene cyclase.
 
  
 0.970
AGA85011.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 0.962
AGA85017.1
PFAM: Fatty acid hydroxylase superfamily.
 
 
 0.923
AGA85240.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.917
AGA87878.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.916
AGA85013.1
Glycosyltransferase, MGT family; PFAM: UDP-glucoronosyl and UDP-glucosyl transferase; TIGRFAM: glycosyltransferase, MGT family; Belongs to the UDP-glycosyltransferase family.
 
   
 0.910
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
   
 
 0.844
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.842
AGA87071.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
   
 
 0.810
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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