STRINGSTRING
AGA85063.1 AGA85063.1 AGA85064.1 AGA85064.1 AGA85065.1 AGA85065.1 AGA85066.1 AGA85066.1 AGA85060.1 AGA85060.1 AGA85067.1 AGA85067.1 AGA85061.1 AGA85061.1 infA infA rpsC rpsC rpsK rpsK AGA87951.1 AGA87951.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
AGA85063.1PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family. (244 aa)    
Predicted Functional Partners:
AGA85064.1
PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
 
 
 0.985
AGA85065.1
Mn2+-dependent serine/threonine protein kinase; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
 
   
 0.954
AGA85066.1
Putative carbamoyl transferase, NodU family; PFAM: Carbamoyltransferase.
 
   
 0.935
AGA85060.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.933
AGA85067.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.924
AGA85061.1
Lipopolysaccharide kinase (Kdo/WaaP) family; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
 
0.912
infA
Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
  
 
 0.826
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.824
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
 0.810
AGA87951.1
PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
 
 
 0.808
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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