node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGA85483.1 | AGA85484.1 | Psest_0897 | Psest_0898 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | Hypothetical protein. | 0.935 |
AGA85483.1 | AGA85485.1 | Psest_0897 | Psest_0899 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | 0.556 |
AGA85484.1 | AGA85483.1 | Psest_0898 | Psest_0897 | Hypothetical protein. | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | 0.935 |
AGA85484.1 | AGA85485.1 | Psest_0898 | Psest_0899 | Hypothetical protein. | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | 0.599 |
AGA85484.1 | rapA | Psest_0898 | Psest_1327 | Hypothetical protein. | DNA/RNA helicase, superfamily II, SNF2 family; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.496 |
AGA85484.1 | recA | Psest_0898 | Psest_2872 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.436 |
AGA85485.1 | AGA85483.1 | Psest_0899 | Psest_0897 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | 0.556 |
AGA85485.1 | AGA85484.1 | Psest_0899 | Psest_0898 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Hypothetical protein. | 0.599 |
AGA85485.1 | AGA88568.1 | Psest_0899 | Psest_4098 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II. | 0.558 |
AGA85485.1 | mfd | Psest_0899 | Psest_1653 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.848 |
AGA85485.1 | rapA | Psest_0899 | Psest_1327 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | DNA/RNA helicase, superfamily II, SNF2 family; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.550 |
AGA85485.1 | recA | Psest_0899 | Psest_2872 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.617 |
AGA85485.1 | rep | Psest_0899 | Psest_3778 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.539 |
AGA85485.1 | uvrA | Psest_0899 | Psest_3576 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.912 |
AGA85485.1 | uvrB | Psest_0899 | Psest_1296 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.992 |
AGA85485.1 | uvrC | Psest_0899 | Psest_2259 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.829 |
AGA88568.1 | AGA85485.1 | Psest_4098 | Psest_0899 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II. | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | 0.558 |
AGA88568.1 | mfd | Psest_4098 | Psest_1653 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II. | Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.527 |
AGA88568.1 | rapA | Psest_4098 | Psest_1327 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II. | DNA/RNA helicase, superfamily II, SNF2 family; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.583 |
AGA88568.1 | recA | Psest_4098 | Psest_2872 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.777 |