STRINGSTRING
AGA86042.1 AGA86042.1 AGA85076.1 AGA85076.1 AGA87830.1 AGA87830.1 AGA85710.1 AGA85710.1 AGA87794.1 AGA87794.1 AGA86838.1 AGA86838.1 AGA86630.1 AGA86630.1 AGA87457.1 AGA87457.1 AGA86040.1 AGA86040.1 proS proS AGA86055.1 AGA86055.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Experiments
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[Homology]
Score
AGA86042.1PFAM: outer membrane porin, OprD family. (418 aa)    
Predicted Functional Partners:
AGA85076.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.686
AGA87830.1
Putative periplasmic/secreted protein; PFAM: Protein of unknown function (DUF541).
  
     0.639
AGA85710.1
PFAM: Protein of unknown function, DUF481.
  
     0.612
AGA87794.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
  
     0.567
AGA86838.1
PFAM: Mechanosensitive ion channel; Conserved TM helix.
  
     0.558
AGA86630.1
PFAM: Domain of unknown function (DUF1883).
  
     0.527
AGA87457.1
Hypothetical protein.
  
     0.527
AGA86040.1
Hypothetical protein.
       0.525
proS
prolyl-tRNA synthetase, family II; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and i [...]
       0.525
AGA86055.1
Cell division and transport-associated protein TolA; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain; TC 2.C.1.2.1.
  
     0.524
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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