STRINGSTRING
AGA86407.1 AGA86407.1 AGA86408.1 AGA86408.1 AGA86409.1 AGA86409.1 AGA86411.1 AGA86411.1 AGA87576.1 AGA87576.1 AGA86410.1 AGA86410.1 AGA85083.1 AGA85083.1 AGA84922.1 AGA84922.1 AGA85215.1 AGA85215.1 AGA85325.1 AGA85325.1 AGA86675.1 AGA86675.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGA86407.1PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family. (450 aa)    
Predicted Functional Partners:
AGA86408.1
VCBS repeat-containing protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies); TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass); VCBS repeat.
 
   
 0.858
AGA86409.1
Hypothetical protein.
 
     0.837
AGA86411.1
Putative periplasmic protein; PFAM: Bacterial protein of unknown function (DUF920).
 
  
 0.817
AGA87576.1
DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
 
     0.743
AGA86410.1
PFAM: EAL domain; HAMP domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.732
AGA85083.1
PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family.
 
 
 0.723
AGA84922.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 
 0.580
AGA85215.1
PFAM: Outer membrane efflux protein.
  
 
 0.580
AGA85325.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 
 0.580
AGA86675.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 
 0.580
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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