STRINGSTRING
AGA86640.1 AGA86640.1 AGA87229.1 AGA87229.1 AGA86639.1 AGA86639.1 AGA87210.1 AGA87210.1 AGA87996.1 AGA87996.1 AGA85752.1 AGA85752.1 AGA88600.1 AGA88600.1 AGA84909.1 AGA84909.1 AGA86410.1 AGA86410.1 AGA87711.1 AGA87711.1 AGA85249.1 AGA85249.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA86640.1PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (318 aa)    
Predicted Functional Partners:
AGA87229.1
HD-GYP domain-containing protein; PFAM: Domain of unknown function (DUF3391); HD domain.
 
 0.903
AGA86639.1
PFAM: Response regulator receiver domain.
 
     0.896
AGA87210.1
PFAM: HD domain; Response regulator receiver domain.
 
  
 0.867
AGA87996.1
EAL domain-containing protein; PFAM: EAL domain.
  
 0.822
AGA85752.1
EAL domain-containing protein; PFAM: EAL domain; GAF domain.
  
 0.813
AGA88600.1
PFAM: Domain of unknown function (DUF3391); HD domain; TIGRFAM: uncharacterized domain HDIG.
 
 0.806
AGA84909.1
PFAM: Response regulator receiver domain.
 
 
    0.738
AGA86410.1
PFAM: EAL domain; HAMP domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
    0.729
AGA87711.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: EAL domain; Response regulator receiver domain; GGDEF domain; PAS fold; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
0.582
AGA85249.1
PFAM: EAL domain; HAMP domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 
0.559
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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