AGA86731.1 protein (Pseudomonas stutzeri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGA86731.1

PFAM: Zonular occludens toxin (Zot). (397 aa)

Predicted Functional Partners:

AGA86729.1

0.906

AGA86730.1

0.773

AGA86738.1

0.601

AGA88584.1

0.599

AGA86732.1

0.501

AGA86728.1

0.488

AGA87406.1

0.418

AGA87550.1

0.418

AGA88592.1

0.418

Your Current Organism:

Pseudomonas stutzeri

NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGA86728.1	AGA86729.1	Psest_2194	Psest_2195	Hypothetical protein.	Hypothetical protein.	0.488
AGA86728.1	AGA86730.1	Psest_2194	Psest_2196	Hypothetical protein.	PFAM: Protein of unknown function (DUF2523).	0.488
AGA86728.1	AGA86731.1	Psest_2194	Psest_2197	Hypothetical protein.	PFAM: Zonular occludens toxin (Zot).	0.488
AGA86729.1	AGA86728.1	Psest_2195	Psest_2194	Hypothetical protein.	Hypothetical protein.	0.488
AGA86729.1	AGA86730.1	Psest_2195	Psest_2196	Hypothetical protein.	PFAM: Protein of unknown function (DUF2523).	0.773
AGA86729.1	AGA86731.1	Psest_2195	Psest_2197	Hypothetical protein.	PFAM: Zonular occludens toxin (Zot).	0.906
AGA86729.1	AGA86732.1	Psest_2195	Psest_2198	Hypothetical protein.	PFAM: DASH complex subunit Dad3.	0.501
AGA86729.1	AGA87406.1	Psest_2195	Psest_2902	Hypothetical protein.	Hypothetical protein.	0.404
AGA86729.1	AGA87550.1	Psest_2195	Psest_3053	Hypothetical protein.	Hypothetical protein.	0.404
AGA86729.1	AGA88584.1	Psest_2195	Psest_4114	Hypothetical protein.	Hypothetical protein; Manually curated.	0.402
AGA86729.1	AGA88592.1	Psest_2195	Psest_4122	Hypothetical protein.	Hypothetical protein.	0.404
AGA86730.1	AGA86728.1	Psest_2196	Psest_2194	PFAM: Protein of unknown function (DUF2523).	Hypothetical protein.	0.488
AGA86730.1	AGA86729.1	Psest_2196	Psest_2195	PFAM: Protein of unknown function (DUF2523).	Hypothetical protein.	0.773
AGA86730.1	AGA86731.1	Psest_2196	Psest_2197	PFAM: Protein of unknown function (DUF2523).	PFAM: Zonular occludens toxin (Zot).	0.773
AGA86730.1	AGA86732.1	Psest_2196	Psest_2198	PFAM: Protein of unknown function (DUF2523).	PFAM: DASH complex subunit Dad3.	0.501
AGA86731.1	AGA86728.1	Psest_2197	Psest_2194	PFAM: Zonular occludens toxin (Zot).	Hypothetical protein.	0.488
AGA86731.1	AGA86729.1	Psest_2197	Psest_2195	PFAM: Zonular occludens toxin (Zot).	Hypothetical protein.	0.906
AGA86731.1	AGA86730.1	Psest_2197	Psest_2196	PFAM: Zonular occludens toxin (Zot).	PFAM: Protein of unknown function (DUF2523).	0.773
AGA86731.1	AGA86732.1	Psest_2197	Psest_2198	PFAM: Zonular occludens toxin (Zot).	PFAM: DASH complex subunit Dad3.	0.501
AGA86731.1	AGA86738.1	Psest_2197	Psest_2204	PFAM: Zonular occludens toxin (Zot).	Hypothetical protein.	0.601