STRINGSTRING
AGA86848.1 AGA86848.1 prpB prpB AGA88317.1 AGA88317.1 AGA85534.1 AGA85534.1 AGA86846.1 AGA86846.1 AGA85609.1 AGA85609.1 AGA86844.1 AGA86844.1 AGA86845.1 AGA86845.1 AGA86849.1 AGA86849.1 AGA86850.1 AGA86850.1 AGA86851.1 AGA86851.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGA86848.1PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (241 aa)    
Predicted Functional Partners:
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.856
AGA88317.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.690
AGA85534.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.670
AGA86846.1
PFAM: Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; Belongs to the citrate synthase family.
  
  
 0.633
AGA85609.1
PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit.
  
    0.619
AGA86844.1
2-methylaconitate cis-trans isomerase; PFAM: PrpF protein; TIGRFAM: probable AcnD-accessory protein PrpF.
 
  
 0.600
AGA86845.1
Aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
 
  
 0.594
AGA86849.1
PFAM: Protein of unknown function (DUF785).
       0.564
AGA86850.1
Hypothetical protein.
       0.564
AGA86851.1
PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligase-related protein.
       0.564
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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