STRINGSTRING
AGA86956.1 AGA86956.1 AGA86955.1 AGA86955.1 AGA86954.1 AGA86954.1 AGA84804.1 AGA84804.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA86956.1PFAM: Protein of unknown function (DUF2892). (117 aa)    
Predicted Functional Partners:
AGA86955.1
PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases.
  
    0.695
AGA86954.1
Hypothetical protein; PFAM: Endonuclease/Exonuclease/phosphatase family.
       0.429
AGA84804.1
Hypothetical protein; PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein.
  
  
 0.415
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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