STRINGSTRING
AGA87229.1 AGA87229.1 AGA86640.1 AGA86640.1 AGA86119.1 AGA86119.1 AGA87660.1 AGA87660.1 AGA86009.1 AGA86009.1 AGA86261.1 AGA86261.1 AGA87687.1 AGA87687.1 AGA88567.1 AGA88567.1 AGA84874.1 AGA84874.1 AGA85262.1 AGA85262.1 AGA86914.1 AGA86914.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA87229.1HD-GYP domain-containing protein; PFAM: Domain of unknown function (DUF3391); HD domain. (429 aa)    
Predicted Functional Partners:
AGA86640.1
PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 0.903
AGA86119.1
PFAM: GGDEF domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 0.777
AGA87660.1
PFAM: GGDEF domain; Cyclic nucleotide-binding domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
   
 0.777
AGA86009.1
PFAM: GGDEF domain; MASE2 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; manually curated.
 
 0.772
AGA86261.1
PFAM: EAL domain; GGDEF domain; CHASE4 domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 
 0.754
AGA87687.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
 0.725
AGA88567.1
PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 
 0.724
AGA84874.1
PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 
 0.715
AGA85262.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 0.708
AGA86914.1
PFAM: EAL domain; 5TMR of 5TMR-LYT; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 
 0.704
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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