STRINGSTRING
AGA87727.1 AGA87727.1 AGA85686.1 AGA85686.1 AGA86468.1 AGA86468.1 AGA86469.1 AGA86469.1 AGA86105.1 AGA86105.1 AGA85278.1 AGA85278.1 lolD lolD lolD-2 lolD-2 AGA88051.1 AGA88051.1 AGA86217.1 AGA86217.1 AGA86219.1 AGA86219.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA87727.1PFAM: Protein of unknown function (DUF1329). (453 aa)    
Predicted Functional Partners:
AGA85686.1
PFAM: Protein of unknown function (DUF1302).
 
    0.943
AGA86468.1
Putative photosystem II stability/assembly factor-like protein; PFAM: BNR/Asp-box repeat.
 
  
 0.871
AGA86469.1
Putative RND superfamily exporter; PFAM: Patched family; MMPL family.
 
  
 0.815
AGA86105.1
Hypothetical protein.
    
 
 0.604
AGA85278.1
PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; LysM domain.
    
   0.549
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
   
 
 0.538
lolD-2
ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
   
 
 0.538
AGA88051.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
   
 
 0.538
AGA86217.1
PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.
   
 
 0.500
AGA86219.1
PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.
   
 
 0.500
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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