STRINGSTRING
AGA87787.1 AGA87787.1 AGA87595.1 AGA87595.1 glpK glpK AGA88769.1 AGA88769.1 AGA85003.1 AGA85003.1 AGA87712.1 AGA87712.1 AGA86836.1 AGA86836.1 rplI rplI AGA87340.1 AGA87340.1 AGA87786.1 AGA87786.1 AGA85675.1 AGA85675.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA87787.1PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; periplasmic serine pepetdase DegS. (385 aa)    
Predicted Functional Partners:
AGA87595.1
Negative regulator of sigma E activity; PFAM: Anti sigma-E protein RseA, C-terminal domain; Anti sigma-E protein RseA, N-terminal domain.
 
 
 0.848
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.748
AGA88769.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain; PAS fold; TIGRFAM: PAS domain S-box.
  
  
 0.707
AGA85003.1
PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain.
  
  
 0.680
AGA87712.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; CHASE domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
  
  
 0.675
AGA86836.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OprF membrane domain; OmpA family.
    
 
 0.646
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
 
 
 
 0.623
AGA87340.1
Site-2 protease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP.
 
  
 0.621
AGA87786.1
PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family.
  
    0.583
AGA85675.1
Flp pilus assembly protein TadD; PFAM: Coatomer epsilon subunit.
 
 0.577
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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