Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGA87928.1 | rlmG | Psest_3439 | Psest_3440 | Flavodoxin reductase family protein; PFAM: Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain. | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.600 |
| AGA88233.1 | rlmG | Psest_3757 | Psest_3440 | TIGR02647 family protein; PFAM: Phosphate-starvation-inducible E; TIGRFAM: TIGR02647 family protein. | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.644 |
| nusG | rlmG | Psest_3619 | Psest_3440 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.445 |
| nusG | rplA | Psest_3619 | Psest_3617 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.959 |
| nusG | rplL | Psest_3619 | Psest_3615 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.987 |
| nusG | rpoB | Psest_3619 | Psest_3613 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.992 |
| nusG | rpsG | Psest_3619 | Psest_3610 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.979 |
| nusG | trmD | Psest_3619 | Psest_3131 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.436 |
| obg | rlmG | Psest_3385 | Psest_3440 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.676 |
| obg | rplA | Psest_3385 | Psest_3617 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.813 |
| obg | rplL | Psest_3385 | Psest_3615 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.673 |
| obg | rpoB | Psest_3385 | Psest_3613 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.416 |
| obg | rpsG | Psest_3385 | Psest_3610 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.479 |
| obg | trmD | Psest_3385 | Psest_3131 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.733 |
| rlmG | AGA87928.1 | Psest_3440 | Psest_3439 | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | Flavodoxin reductase family protein; PFAM: Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain. | 0.600 |
| rlmG | AGA88233.1 | Psest_3440 | Psest_3757 | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | TIGR02647 family protein; PFAM: Phosphate-starvation-inducible E; TIGRFAM: TIGR02647 family protein. | 0.644 |
| rlmG | nusG | Psest_3440 | Psest_3619 | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.445 |
| rlmG | obg | Psest_3440 | Psest_3385 | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.676 |
| rlmG | rplA | Psest_3440 | Psest_3617 | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.464 |
| rlmG | rplL | Psest_3440 | Psest_3615 | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.499 |
page 1 of 4