STRINGSTRING
AGA87967.1 AGA87967.1 rimO rimO AGA84919.1 AGA84919.1 AGA87965.1 AGA87965.1 AGA87966.1 AGA87966.1 AGA87962.1 AGA87962.1 AGA87963.1 AGA87963.1 AGA87964.1 AGA87964.1 AGA87961.1 AGA87961.1 AGA87960.1 AGA87960.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA87967.1PFAM: Cytochrome b(N-terminal)/b6/petB. (183 aa)    
Predicted Functional Partners:
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
      0.701
AGA84919.1
Hypothetical protein; PFAM: YceI-like domain.
 
  
 0.585
AGA87965.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.564
AGA87966.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
       0.564
AGA87962.1
Hypothetical protein.
       0.498
AGA87963.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.479
AGA87964.1
Hypothetical protein.
       0.479
AGA87961.1
AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme.
       0.470
AGA87960.1
PFAM: Thermostable hemolysin.
       0.460
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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