STRINGSTRING
AGA88124.1 AGA88124.1 AGA86421.1 AGA86421.1 rpoD rpoD rpoC rpoC rpoB rpoB rpoA rpoA rpoZ rpoZ AGA88234.1 AGA88234.1 AGA85423.1 AGA85423.1 AGA86756.1 AGA86756.1 AGA87060.1 AGA87060.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGA88124.1PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain. (214 aa)    
Predicted Functional Partners:
AGA86421.1
PFAM: Adenylate and Guanylate cyclase catalytic domain; MASE2 domain.
 
 0.974
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.846
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.815
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.812
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.809
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.799
AGA88234.1
PFAM: Adenylate cyclase, class-I.
  
   
 0.738
AGA85423.1
cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain.
  
   
 0.615
AGA86756.1
PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain.
  
   
 0.567
AGA87060.1
PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain.
  
   
 0.563
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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