STRINGSTRING
AGA88690.1 AGA88690.1 thrB thrB AGA88017.1 AGA88017.1 AGA88020.1 AGA88020.1 AGA88021.1 AGA88021.1 polA polA AGA86166.1 AGA86166.1 AGA86414.1 AGA86414.1 AGA88322.1 AGA88322.1 AGA88692.1 AGA88692.1 AGA87160.1 AGA87160.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA88690.1PFAM: Protein of unknown function (DUF2782). (94 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; PFAM: Phosphotransferase enzyme family; TIGRFAM: homoserine kinase, Neisseria type; Belongs to the pseudomonas-type ThrB family.
 
    0.850
AGA88017.1
Putative membrane protein.
  
    0.817
AGA88020.1
PFAM: Peptidase propeptide and YPEB domain.
  
    0.817
AGA88021.1
PFAM: Peptidase propeptide and YPEB domain.
  
    0.817
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.641
AGA86166.1
Hypothetical protein.
  
     0.580
AGA86414.1
PFAM: Uncharacterised protein family (UPF0149); TIGRFAM: yecA family protein; Belongs to the UPF0149 family.
  
     0.546
AGA88322.1
CBS domain-containing protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain.
   
  
 0.521
AGA88692.1
Putative Rossmann fold nucleotide-binding protein; PFAM: Domain of unknown function (DUF3412); Possible lysine decarboxylase.
 
     0.510
AGA87160.1
Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain.
  
     0.490
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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