STRINGSTRING
AGA88806.1 AGA88806.1 AGA88807.1 AGA88807.1 AGA88055.1 AGA88055.1 AGA88808.1 AGA88808.1 AGA88805.1 AGA88805.1 AGA86935.1 AGA86935.1 AGA87831.1 AGA87831.1 AGA86055.1 AGA86055.1 AGA84734.1 AGA84734.1 AGA84993.1 AGA84993.1 AGA84906.1 AGA84906.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGA88806.1PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent siderophore receptor. (830 aa)    
Predicted Functional Partners:
AGA88807.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.932
AGA88055.1
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.798
AGA88808.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.772
AGA88805.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
  
 0.754
AGA86935.1
Periplasmic protein TonB, links inner and outer membranes; PFAM: Gram-negative bacterial tonB protein.
  
 
 0.679
AGA87831.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
  
 0.661
AGA86055.1
Cell division and transport-associated protein TolA; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain; TC 2.C.1.2.1.
  
 
 0.562
AGA84734.1
LysM domain-containing protein; PFAM: LysM domain.
    
   0.526
AGA84993.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
  
 0.524
AGA84906.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
 
 0.518
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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