Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| Psyr_0005 | Psyr_0006 | Conserved hypothetical protein. | Putative phenylacetaldoxime dehydratase. | 0.775 |
| Psyr_0005 | Psyr_0007 | Conserved hypothetical protein. | Aliphatic nitrilase; Arylacetonitrilase which is capable of hydrolyzing indole-3- acetonitrile (IAN) to the plant hormone indole-3-acetate (IAA), and allows the plant pathogenic bacterium to use IAN as a sole nitrogen source. Is also able to hydrolyze phenylpropionitrile (PPN), allowing the use of this compound as a sole nitrogen source. This enzyme may represent an additional mechanism for IAA biosynthesis or may be used to degrade and assimilate aldoximes and nitriles produced during host plant secondary metabolism. | 0.739 |
| Psyr_0005 | Psyr_0008 | Conserved hypothetical protein. | Transcriptional regulator, AraC family. | 0.531 |
| Psyr_0005 | Psyr_2589 | Conserved hypothetical protein. | IucA/IucC. | 0.402 |
| Psyr_0006 | Psyr_0005 | Putative phenylacetaldoxime dehydratase. | Conserved hypothetical protein. | 0.775 |
| Psyr_0006 | Psyr_0007 | Putative phenylacetaldoxime dehydratase. | Aliphatic nitrilase; Arylacetonitrilase which is capable of hydrolyzing indole-3- acetonitrile (IAN) to the plant hormone indole-3-acetate (IAA), and allows the plant pathogenic bacterium to use IAN as a sole nitrogen source. Is also able to hydrolyze phenylpropionitrile (PPN), allowing the use of this compound as a sole nitrogen source. This enzyme may represent an additional mechanism for IAA biosynthesis or may be used to degrade and assimilate aldoximes and nitriles produced during host plant secondary metabolism. | 0.924 |
| Psyr_0006 | Psyr_0008 | Putative phenylacetaldoxime dehydratase. | Transcriptional regulator, AraC family. | 0.527 |
| Psyr_0007 | Psyr_0005 | Aliphatic nitrilase; Arylacetonitrilase which is capable of hydrolyzing indole-3- acetonitrile (IAN) to the plant hormone indole-3-acetate (IAA), and allows the plant pathogenic bacterium to use IAN as a sole nitrogen source. Is also able to hydrolyze phenylpropionitrile (PPN), allowing the use of this compound as a sole nitrogen source. This enzyme may represent an additional mechanism for IAA biosynthesis or may be used to degrade and assimilate aldoximes and nitriles produced during host plant secondary metabolism. | Conserved hypothetical protein. | 0.739 |
| Psyr_0007 | Psyr_0006 | Aliphatic nitrilase; Arylacetonitrilase which is capable of hydrolyzing indole-3- acetonitrile (IAN) to the plant hormone indole-3-acetate (IAA), and allows the plant pathogenic bacterium to use IAN as a sole nitrogen source. Is also able to hydrolyze phenylpropionitrile (PPN), allowing the use of this compound as a sole nitrogen source. This enzyme may represent an additional mechanism for IAA biosynthesis or may be used to degrade and assimilate aldoximes and nitriles produced during host plant secondary metabolism. | Putative phenylacetaldoxime dehydratase. | 0.924 |
| Psyr_0007 | Psyr_0008 | Aliphatic nitrilase; Arylacetonitrilase which is capable of hydrolyzing indole-3- acetonitrile (IAN) to the plant hormone indole-3-acetate (IAA), and allows the plant pathogenic bacterium to use IAN as a sole nitrogen source. Is also able to hydrolyze phenylpropionitrile (PPN), allowing the use of this compound as a sole nitrogen source. This enzyme may represent an additional mechanism for IAA biosynthesis or may be used to degrade and assimilate aldoximes and nitriles produced during host plant secondary metabolism. | Transcriptional regulator, AraC family. | 0.596 |
| Psyr_0008 | Psyr_0005 | Transcriptional regulator, AraC family. | Conserved hypothetical protein. | 0.531 |
| Psyr_0008 | Psyr_0006 | Transcriptional regulator, AraC family. | Putative phenylacetaldoxime dehydratase. | 0.527 |
| Psyr_0008 | Psyr_0007 | Transcriptional regulator, AraC family. | Aliphatic nitrilase; Arylacetonitrilase which is capable of hydrolyzing indole-3- acetonitrile (IAN) to the plant hormone indole-3-acetate (IAA), and allows the plant pathogenic bacterium to use IAN as a sole nitrogen source. Is also able to hydrolyze phenylpropionitrile (PPN), allowing the use of this compound as a sole nitrogen source. This enzyme may represent an additional mechanism for IAA biosynthesis or may be used to degrade and assimilate aldoximes and nitriles produced during host plant secondary metabolism. | 0.596 |
| Psyr_2589 | Psyr_0005 | IucA/IucC. | Conserved hypothetical protein. | 0.402 |