STRINGSTRING
Psyr_0020 Psyr_0020 Psyr_0407 Psyr_0407 Psyr_0404 Psyr_0404 Psyr_0405 Psyr_0405 Psyr_0403 Psyr_0403 Psyr_0406 Psyr_0406 Psyr_4587 Psyr_4587 Psyr_1654 Psyr_1654 Psyr_0719 Psyr_0719 Psyr_0723 Psyr_0723 Psyr_0714 Psyr_0714
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0020Peptidoglycan-binding LysM. (341 aa)    
Predicted Functional Partners:
Psyr_0407
Type II and III secretion system protein:NolW-like protein:NolW-like protein.
 
 
 
 0.951
Psyr_0404
Fimbrial assembly.
  
 
   0.883
Psyr_0405
Pilus assembly protein, PilO.
 
 
   0.882
Psyr_0403
Type IV pilus assembly protein PilM.
  
 
   0.879
Psyr_0406
Pilus assembly protein, PilQ.
 
 
   0.860
Psyr_4587
Baseplate J-like protein.
  
 
 0.807
Psyr_1654
Type IV pilus assembly PilZ.
  
    0.777
Psyr_0719
Type IV pilus-associated protein, putative.
  
     0.748
Psyr_0723
Sensor protein PilS.
  
     0.741
Psyr_0714
Type IV pilus biogenesis protein.
  
   
 0.737
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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