STRINGSTRING
Psyr_0040 Psyr_0040 Psyr_4446 Psyr_4446 Psyr_0039 Psyr_0039 KatE KatE Psyr_2355 Psyr_2355 Psyr_4219 Psyr_4219 Psyr_4175 Psyr_4175 Psyr_0041 Psyr_0041 Psyr_3773 Psyr_3773 Psyr_1404 Psyr_1404 Psyr_3039 Psyr_3039
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0040OsmC-like protein. (143 aa)    
Predicted Functional Partners:
Psyr_4446
SmpA/OmlA.
   
  
 0.714
Psyr_0039
Luciferase.
 
     0.641
KatE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.594
Psyr_2355
GAF.
  
    0.544
Psyr_4219
GAF.
  
    0.531
Psyr_4175
Transport-associated protein.
   
  
 0.527
Psyr_0041
Protein of unknown function DUF1161.
       0.515
Psyr_3773
GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal.
  
    0.493
Psyr_1404
Ferritin and Dps; Belongs to the Dps family.
  
  
 0.487
Psyr_3039
Protein of unknown function DUF883.
   
  
 0.456
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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