STRINGSTRING
Psyr_0046 Psyr_0046 Psyr_0045 Psyr_0045 Psyr_3957 Psyr_3957 Psyr_1688 Psyr_1688 Psyr_1913 Psyr_1913 sdhE sdhE Psyr_4360 Psyr_4360 Psyr_2006 Psyr_2006 rmf rmf Psyr_1687 Psyr_1687 Psyr_1329 Psyr_1329
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0046Conserved hypothetical protein. (96 aa)    
Predicted Functional Partners:
Psyr_0045
Oligopeptidase A, Metallo peptidase, MEROPS family M03A.
       0.795
Psyr_3957
Anti sigma-E protein, RseA.
  
     0.750
Psyr_1688
Protein of unknown function DUF1315.
  
     0.748
Psyr_1913
Sulfate transporter/antisigma-factor antagonist STAS.
  
     0.726
sdhE
Protein of unknown function DUF339; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.
  
     0.718
Psyr_4360
Protein of unknown function DUF493; Belongs to the UPF0250 family.
  
    0.694
Psyr_2006
Succinate dehydrogenase subunit D; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
     0.691
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
     0.689
Psyr_1687
Rhomboid-like protein.
  
     0.665
Psyr_1329
Conserved hypothetical protein.
  
    0.654
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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