STRINGSTRING
Psyr_0197 Psyr_0197 Psyr_0021 Psyr_0021 Psyr_4688 Psyr_4688 Psyr_4114 Psyr_4114 ruvC ruvC Psyr_1632 Psyr_1632 Psyr_3805 Psyr_3805 secF secF secD secD Psyr_3635 Psyr_3635 def def
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0197Mg chelatase-related protein. (497 aa)    
Predicted Functional Partners:
Psyr_0021
DNA protecting protein DprA.
 
 0.822
Psyr_4688
Phosphoribosyltransferase.
 
  
 0.817
Psyr_4114
Protein of unknown function UPF0102; Belongs to the UPF0102 family.
 
  
 0.788
ruvC
Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
   
 0.681
Psyr_1632
ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.609
Psyr_3805
Hypothetical protein.
 
 
 0.548
secF
Protein translocase subunit secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
     0.531
secD
SecD/SecF/SecDF export membrane protein:SecD export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
     0.451
Psyr_3635
Competence protein ComEA helix-hairpin-helix region.
  
  
 0.441
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
     0.437
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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