STRINGSTRING
Psyr_0198 Psyr_0198 Psyr_2673 Psyr_2673 Psyr_2674 Psyr_2674 Psyr_3239 Psyr_3239 Psyr_0199 Psyr_0199 Psyr_3000 Psyr_3000 Psyr_3001 Psyr_3001 Psyr_1480 Psyr_1480
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0198Citrate transporter. (435 aa)    
Predicted Functional Partners:
Psyr_2673
Protein of unknown function DUF1446.
 
     0.718
Psyr_2674
Conserved hypothetical protein.
 
     0.683
Psyr_3239
Short chain fatty acid transporter.
  
     0.463
Psyr_0199
Glutathione-dependent formaldehyde-activating, GFA.
       0.446
Psyr_3000
Methyltransferase, putative.
  
     0.418
Psyr_3001
Glycosyl transferase, family 2.
  
     0.414
Psyr_1480
Conserved hypothetical protein.
  
     0.408
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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