Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0303 | PyrC | Psyr_0303 | Psyr_0481 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Dihydroorotase. | 0.767 |
Psyr_0303 | carA | Psyr_0303 | Psyr_4192 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.769 |
Psyr_0303 | carB | Psyr_0303 | Psyr_4191 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.782 |
Psyr_0303 | purL | Psyr_0303 | Psyr_1269 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.606 |
Psyr_0303 | pyrB | Psyr_0303 | Psyr_0482 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.764 |
Psyr_0303 | pyrD | Psyr_0303 | Psyr_2106 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.931 |
Psyr_0303 | pyrE | Psyr_0303 | Psyr_0216 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.842 |
Psyr_0303 | pyrF | Psyr_0303 | Psyr_1836 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.804 |
Psyr_0303 | pyrR | Psyr_0303 | Psyr_0483 | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | Uracil phosphoribosyltransferase; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.604 |
PyrC | Psyr_0303 | Psyr_0481 | Psyr_0303 | Dihydroorotase. | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | 0.767 |
PyrC | carA | Psyr_0481 | Psyr_4192 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.993 |
PyrC | carB | Psyr_0481 | Psyr_4191 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.994 |
PyrC | purL | Psyr_0481 | Psyr_1269 | Dihydroorotase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.609 |
PyrC | pyrB | Psyr_0481 | Psyr_0482 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
PyrC | pyrD | Psyr_0481 | Psyr_2106 | Dihydroorotase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.992 |
PyrC | pyrE | Psyr_0481 | Psyr_0216 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.927 |
PyrC | pyrF | Psyr_0481 | Psyr_1836 | Dihydroorotase. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.927 |
PyrC | pyrR | Psyr_0481 | Psyr_0483 | Dihydroorotase. | Uracil phosphoribosyltransferase; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.996 |
carA | Psyr_0303 | Psyr_4192 | Psyr_0303 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. | 0.769 |
carA | PyrC | Psyr_4192 | Psyr_0481 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotase. | 0.993 |
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