STRINGSTRING
Psyr_0223 Psyr_0223 Psyr_4239 Psyr_4239 Psyr_4240 Psyr_4240 DppF DppF Psyr_4241 Psyr_4241 Psyr_2679 Psyr_2679 Psyr_2680 Psyr_2680 Psyr_2265 Psyr_2265 Psyr_4211 Psyr_4211 Psyr_4214 Psyr_4214 Psyr_4215 Psyr_4215
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0223Extracellular solute-binding protein, family 5. (528 aa)    
Predicted Functional Partners:
Psyr_4239
Binding-protein-dependent transport systems inner membrane component.
 
 0.839
Psyr_4240
Binding-protein-dependent transport systems inner membrane component.
 
 0.834
DppF
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; Belongs to the ABC transporter superfamily.
 
  
 0.716
Psyr_4241
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; Belongs to the ABC transporter superfamily.
 
  
 0.700
Psyr_2679
Binding-protein-dependent transport systems inner membrane component.
 
 0.560
Psyr_2680
Binding-protein-dependent transport systems inner membrane component.
 
 0.554
Psyr_2265
Binding-protein-dependent transport systems inner membrane component.
 
 0.531
Psyr_4211
Extracellular solute-binding protein, family 5.
  
  
 
0.519
Psyr_4214
Binding-protein-dependent transport systems inner membrane component.
 
 0.515
Psyr_4215
Binding-protein-dependent transport systems inner membrane component.
 
 0.498
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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