STRINGSTRING
Psyr_0271 Psyr_0271 thrB thrB Psyr_3213 Psyr_3213 Psyr_3214 Psyr_3214 Psyr_3770 Psyr_3770 polA polA Psyr_3739 Psyr_3739 Psyr_3490 Psyr_3490 Psyr_1329 Psyr_1329 Psyr_1352 Psyr_1352 Psyr_3390 Psyr_3390
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0271Conserved hypothetical protein. (95 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; Belongs to the pseudomonas-type ThrB family.
 
    0.817
Psyr_3213
Propeptide, PepSY amd peptidase M4.
 
    0.713
Psyr_3214
Propeptide, PepSY amd peptidase M4.
  
    0.676
Psyr_3770
Propeptide, PepSY amd peptidase M4.
  
    0.676
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.666
Psyr_3739
Conserved hypothetical protein; Belongs to the UPF0149 family.
  
     0.607
Psyr_3490
Conserved hypothetical protein.
  
     0.537
Psyr_1329
Conserved hypothetical protein.
  
     0.533
Psyr_1352
Outer membrane protein (OmpH-like).
  
     0.473
Psyr_3390
Heme exporter protein D (CcmD); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.449
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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