Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0284 | Psyr_0285 | Psyr_0284 | Psyr_0285 | Electron transport protein SCO1/SenC. | Cytochrome c oxidase assembly protein CtaG/Cox11. | 0.857 |
Psyr_0284 | Psyr_0286 | Psyr_0284 | Psyr_0286 | Electron transport protein SCO1/SenC. | Conserved hypothetical protein. | 0.506 |
Psyr_0284 | Psyr_1141 | Psyr_0284 | Psyr_1141 | Electron transport protein SCO1/SenC. | Cytochrome bo3 quinol oxidase subunit 2. | 0.746 |
Psyr_0284 | Psyr_1880 | Psyr_0284 | Psyr_1880 | Electron transport protein SCO1/SenC. | Cytochrome c, class I. | 0.540 |
Psyr_0284 | Psyr_3416 | Psyr_0284 | Psyr_3416 | Electron transport protein SCO1/SenC. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.604 |
Psyr_0284 | cyoE | Psyr_0284 | Psyr_1145 | Electron transport protein SCO1/SenC. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.409 |
Psyr_0285 | Psyr_0284 | Psyr_0285 | Psyr_0284 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Electron transport protein SCO1/SenC. | 0.857 |
Psyr_0285 | Psyr_0286 | Psyr_0285 | Psyr_0286 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Conserved hypothetical protein. | 0.509 |
Psyr_0285 | Psyr_1141 | Psyr_0285 | Psyr_1141 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Cytochrome bo3 quinol oxidase subunit 2. | 0.770 |
Psyr_0285 | Psyr_1142 | Psyr_0285 | Psyr_1142 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Cytochrome bo3 quinol oxidase subunit 1 apoprotein; Belongs to the heme-copper respiratory oxidase family. | 0.625 |
Psyr_0285 | Psyr_1143 | Psyr_0285 | Psyr_1143 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Cytochrome bo3 quinol oxidase subunit 3. | 0.745 |
Psyr_0285 | Psyr_1880 | Psyr_0285 | Psyr_1880 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Cytochrome c, class I. | 0.755 |
Psyr_0285 | Psyr_2285 | Psyr_0285 | Psyr_2285 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Twin-arginine translocation pathway signal. | 0.655 |
Psyr_0285 | Psyr_3416 | Psyr_0285 | Psyr_3416 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.488 |
Psyr_0285 | cyoE | Psyr_0285 | Psyr_1145 | Cytochrome c oxidase assembly protein CtaG/Cox11. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.983 |
Psyr_0285 | dinB | Psyr_0285 | Psyr_1397 | Cytochrome c oxidase assembly protein CtaG/Cox11. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.520 |
Psyr_0286 | Psyr_0284 | Psyr_0286 | Psyr_0284 | Conserved hypothetical protein. | Electron transport protein SCO1/SenC. | 0.506 |
Psyr_0286 | Psyr_0285 | Psyr_0286 | Psyr_0285 | Conserved hypothetical protein. | Cytochrome c oxidase assembly protein CtaG/Cox11. | 0.509 |
Psyr_1141 | Psyr_0284 | Psyr_1141 | Psyr_0284 | Cytochrome bo3 quinol oxidase subunit 2. | Electron transport protein SCO1/SenC. | 0.746 |
Psyr_1141 | Psyr_0285 | Psyr_1141 | Psyr_0285 | Cytochrome bo3 quinol oxidase subunit 2. | Cytochrome c oxidase assembly protein CtaG/Cox11. | 0.770 |
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