Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NudE | Psyr_0219 | Psyr_4941 | Psyr_0219 | NUDIX hydrolase. | Phosphomannomutase. | 0.903 |
NudE | Psyr_0547 | Psyr_4941 | Psyr_0547 | NUDIX hydrolase. | Conserved hypothetical protein 52. | 0.911 |
NudE | Psyr_2908 | Psyr_4941 | Psyr_2908 | NUDIX hydrolase. | Phosphoglucomutase, alpha-D-glucose phosphate-specific. | 0.902 |
NudE | birA | Psyr_4941 | Psyr_4564 | NUDIX hydrolase. | Biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.483 |
NudE | nnrD | Psyr_4941 | Psyr_0567 | NUDIX hydrolase. | Protein of unknown function UPF0031:YjeF-related protein, N-terminal; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hyd [...] | 0.719 |
NudE | prs | Psyr_4941 | Psyr_0944 | NUDIX hydrolase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.906 |
Psyr_0219 | NudE | Psyr_0219 | Psyr_4941 | Phosphomannomutase. | NUDIX hydrolase. | 0.903 |
Psyr_0219 | Psyr_0547 | Psyr_0219 | Psyr_0547 | Phosphomannomutase. | Conserved hypothetical protein 52. | 0.903 |
Psyr_0219 | Psyr_2908 | Psyr_0219 | Psyr_2908 | Phosphomannomutase. | Phosphoglucomutase, alpha-D-glucose phosphate-specific. | 0.943 |
Psyr_0219 | prs | Psyr_0219 | Psyr_0944 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.929 |
Psyr_0546 | Psyr_0547 | Psyr_0546 | Psyr_0547 | Lipoprotein, putative. | Conserved hypothetical protein 52. | 0.556 |
Psyr_0546 | Psyr_0548 | Psyr_0546 | Psyr_0548 | Lipoprotein, putative. | Protein of unknown function DUF1249. | 0.556 |
Psyr_0546 | cpdA | Psyr_0546 | Psyr_0549 | Lipoprotein, putative. | Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.401 |
Psyr_0547 | NudE | Psyr_0547 | Psyr_4941 | Conserved hypothetical protein 52. | NUDIX hydrolase. | 0.911 |
Psyr_0547 | Psyr_0219 | Psyr_0547 | Psyr_0219 | Conserved hypothetical protein 52. | Phosphomannomutase. | 0.903 |
Psyr_0547 | Psyr_0546 | Psyr_0547 | Psyr_0546 | Conserved hypothetical protein 52. | Lipoprotein, putative. | 0.556 |
Psyr_0547 | Psyr_0548 | Psyr_0547 | Psyr_0548 | Conserved hypothetical protein 52. | Protein of unknown function DUF1249. | 0.884 |
Psyr_0547 | Psyr_0550 | Psyr_0547 | Psyr_0550 | Conserved hypothetical protein 52. | Protein of unknown function UPF0227. | 0.447 |
Psyr_0547 | Psyr_2908 | Psyr_0547 | Psyr_2908 | Conserved hypothetical protein 52. | Phosphoglucomutase, alpha-D-glucose phosphate-specific. | 0.906 |
Psyr_0547 | birA | Psyr_0547 | Psyr_4564 | Conserved hypothetical protein 52. | Biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.483 |
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