STRINGSTRING
Psyr_0626 Psyr_0626 Psyr_0625 Psyr_0625 Psyr_0031 Psyr_0031 Psyr_1921 Psyr_1921 Psyr_2027 Psyr_2027 Psyr_2609 Psyr_2609 Psyr_3101 Psyr_3101 Psyr_3187 Psyr_3187 Psyr_3775 Psyr_3775 Psyr_3915 Psyr_3915 Psyr_4478 Psyr_4478
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0626DedA. (215 aa)    
Predicted Functional Partners:
Psyr_0625
Protein of unknown function DUF980; Belongs to the MtfA family.
  
  
 0.867
Psyr_0031
Alpha/beta hydrolase fold protein.
      
 0.670
Psyr_1921
Alpha/beta hydrolase fold protein.
      
 0.670
Psyr_2027
Epoxide hydrolase, Serine peptidase, MEROPS family S33.
      
 0.670
Psyr_2609
Alpha/beta hydrolase fold protein.
      
 0.670
Psyr_3101
Alpha/beta hydrolase fold protein.
      
 0.670
Psyr_3187
Alpha/beta hydrolase fold protein.
      
 0.670
Psyr_3775
Alpha/beta hydrolase fold protein.
      
 0.670
Psyr_3915
Alpha/beta hydrolase fold protein.
      
 0.670
Psyr_4478
Alpha/beta hydrolase fold protein.
      
 0.670
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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