STRINGSTRING
Psyr_0639 Psyr_0639 Psyr_0640 Psyr_0640 Psyr_0642 Psyr_0642 cmoM cmoM Psyr_1017 Psyr_1017 Psyr_2954 Psyr_2954 Psyr_0643 Psyr_0643 FabG-2 FabG-2 Psyr_3660 Psyr_3660
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0639Lipoprotein, putative. (188 aa)    
Predicted Functional Partners:
Psyr_0640
Lipoprotein, putative.
 
    
0.811
Psyr_0642
Conserved hypothetical protein.
       0.708
cmoM
smtA protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
       0.701
Psyr_1017
Type III effector HopJ1.
  
     0.550
Psyr_2954
Phospholipase/Carboxylesterase.
  
     0.484
Psyr_0643
MaoC-like dehydratase.
       0.460
FabG-2
Short-chain dehydrogenase/reductase SDR.
       0.418
Psyr_3660
Conserved hypothetical protein.
  
     0.407
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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