Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0676 | PyrC | Psyr_0676 | Psyr_0481 | Xanthine/uracil permease family. | Dihydroorotase. | 0.756 |
Psyr_0676 | carA | Psyr_0676 | Psyr_4192 | Xanthine/uracil permease family. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.729 |
Psyr_0676 | carB | Psyr_0676 | Psyr_4191 | Xanthine/uracil permease family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.730 |
Psyr_0676 | purL | Psyr_0676 | Psyr_1269 | Xanthine/uracil permease family. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.755 |
Psyr_0676 | pyrB | Psyr_0676 | Psyr_0482 | Xanthine/uracil permease family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.760 |
Psyr_0676 | pyrD | Psyr_0676 | Psyr_2106 | Xanthine/uracil permease family. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.666 |
Psyr_0676 | pyrE | Psyr_0676 | Psyr_0216 | Xanthine/uracil permease family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.742 |
Psyr_0676 | pyrF | Psyr_0676 | Psyr_1836 | Xanthine/uracil permease family. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.750 |
Psyr_0676 | pyrR | Psyr_0676 | Psyr_0483 | Xanthine/uracil permease family. | Uracil phosphoribosyltransferase; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.760 |
Psyr_0676 | xpt | Psyr_0676 | Psyr_0076 | Xanthine/uracil permease family. | Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. | 0.727 |
PyrC | Psyr_0676 | Psyr_0481 | Psyr_0676 | Dihydroorotase. | Xanthine/uracil permease family. | 0.756 |
PyrC | carA | Psyr_0481 | Psyr_4192 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.993 |
PyrC | carB | Psyr_0481 | Psyr_4191 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.994 |
PyrC | purL | Psyr_0481 | Psyr_1269 | Dihydroorotase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.609 |
PyrC | pyrB | Psyr_0481 | Psyr_0482 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
PyrC | pyrD | Psyr_0481 | Psyr_2106 | Dihydroorotase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.992 |
PyrC | pyrE | Psyr_0481 | Psyr_0216 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.927 |
PyrC | pyrF | Psyr_0481 | Psyr_1836 | Dihydroorotase. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.927 |
PyrC | pyrR | Psyr_0481 | Psyr_0483 | Dihydroorotase. | Uracil phosphoribosyltransferase; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.996 |
carA | Psyr_0676 | Psyr_4192 | Psyr_0676 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Xanthine/uracil permease family. | 0.729 |
page 1 of 5