Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NudE | Psyr_0219 | Psyr_4941 | Psyr_0219 | NUDIX hydrolase. | Phosphomannomutase. | 0.903 |
NudE | Psyr_0547 | Psyr_4941 | Psyr_0547 | NUDIX hydrolase. | Conserved hypothetical protein 52. | 0.911 |
NudE | Psyr_2908 | Psyr_4941 | Psyr_2908 | NUDIX hydrolase. | Phosphoglucomutase, alpha-D-glucose phosphate-specific. | 0.902 |
NudE | prs | Psyr_4941 | Psyr_0944 | NUDIX hydrolase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.906 |
Psyr_0219 | NudE | Psyr_0219 | Psyr_4941 | Phosphomannomutase. | NUDIX hydrolase. | 0.903 |
Psyr_0219 | Psyr_0547 | Psyr_0219 | Psyr_0547 | Phosphomannomutase. | Conserved hypothetical protein 52. | 0.903 |
Psyr_0219 | Psyr_2572 | Psyr_0219 | Psyr_2572 | Phosphomannomutase. | Ribose-5-phosphate isomerase. | 0.910 |
Psyr_0219 | Psyr_2908 | Psyr_0219 | Psyr_2908 | Phosphomannomutase. | Phosphoglucomutase, alpha-D-glucose phosphate-specific. | 0.943 |
Psyr_0219 | Psyr_4792 | Psyr_0219 | Psyr_4792 | Phosphomannomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.926 |
Psyr_0219 | prs | Psyr_0219 | Psyr_0944 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.929 |
Psyr_0219 | rbsK | Psyr_0219 | Psyr_2155 | Phosphomannomutase. | Carbohydrate kinase, PfkB; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.907 |
Psyr_0219 | rbsK-2 | Psyr_0219 | Psyr_4487 | Phosphomannomutase. | Carbohydrate kinase, PfkB; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.907 |
Psyr_0219 | rpiA | Psyr_0219 | Psyr_4847 | Phosphomannomutase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.915 |
Psyr_0547 | NudE | Psyr_0547 | Psyr_4941 | Conserved hypothetical protein 52. | NUDIX hydrolase. | 0.911 |
Psyr_0547 | Psyr_0219 | Psyr_0547 | Psyr_0219 | Conserved hypothetical protein 52. | Phosphomannomutase. | 0.903 |
Psyr_0547 | Psyr_2908 | Psyr_0547 | Psyr_2908 | Conserved hypothetical protein 52. | Phosphoglucomutase, alpha-D-glucose phosphate-specific. | 0.906 |
Psyr_0547 | prs | Psyr_0547 | Psyr_0944 | Conserved hypothetical protein 52. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.906 |
Psyr_2572 | Psyr_0219 | Psyr_2572 | Psyr_0219 | Ribose-5-phosphate isomerase. | Phosphomannomutase. | 0.910 |
Psyr_2572 | Psyr_2908 | Psyr_2572 | Psyr_2908 | Ribose-5-phosphate isomerase. | Phosphoglucomutase, alpha-D-glucose phosphate-specific. | 0.900 |
Psyr_2572 | Psyr_4792 | Psyr_2572 | Psyr_4792 | Ribose-5-phosphate isomerase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.939 |
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