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Psyr_1054 Psyr_1054 Psyr_1055 Psyr_1055 Psyr_1060 Psyr_1060 algL algL Psyr_1058 Psyr_1058 Psyr_1062 Psyr_1062 Psyr_1053 Psyr_1053 Psyr_1057 Psyr_1057 Psyr_3551 Psyr_3551 Psyr_2056 Psyr_2056 Psyr_1061 Psyr_1061
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1054Alginate biosynthesis protein AlgJ. (391 aa)    
Predicted Functional Partners:
Psyr_1055
Membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family.
 
  
 0.958
Psyr_1060
Sel1-like repeat protein.
 
 
 0.950
algL
Poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
 
  
 0.938
Psyr_1058
Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis.
 
  
 0.934
Psyr_1062
Alginate biosynthesis protein Alg8.
 
  
 0.911
Psyr_1053
Alginate biosynthesis protein AlgF.
  
  
 0.851
Psyr_1057
Alginate biosynthesis protein AlgX.
 
  
0.809
Psyr_3551
Arc-like DNA binding protein.
  
     0.769
Psyr_2056
CHAD.
  
     0.740
Psyr_1061
Alginate biosynthesis protein Alg44.
  
  
 0.726
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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