STRINGSTRING
Psyr_1106 Psyr_1106 Psyr_1107 Psyr_1107 Psyr_1040 Psyr_1040 Psyr_1105 Psyr_1105 Psyr_4731 Psyr_4731 Psyr_1943 Psyr_1943 Psyr_2580 Psyr_2580 Psyr_1104 Psyr_1104 Psyr_1038 Psyr_1038 Psyr_1961 Psyr_1961 Psyr_2229 Psyr_2229
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1106FecR protein. (321 aa)    
Predicted Functional Partners:
Psyr_1107
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.960
Psyr_1040
RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.901
Psyr_1105
TonB-dependent hemoglobin/transferrin/lactoferrin receptor:TonB-dependent heme/hemoglobin receptor.
 
  
 0.881
Psyr_4731
Sigma-70 region 2:Sigma-70 region 4; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.836
Psyr_1943
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.835
Psyr_2580
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.835
Psyr_1104
Heme oxygenase.
 
  
 0.826
Psyr_1038
TonB-dependent siderophore receptor.
 
 
 0.795
Psyr_1961
TonB-dependent siderophore receptor.
 
 
 0.779
Psyr_2229
TonB-dependent siderophore receptor.
 
 
 0.769
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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