STRINGSTRING
Psyr_1125 Psyr_1125 Psyr_1293 Psyr_1293 Psyr_3942 Psyr_3942 Psyr_4221 Psyr_4221 Psyr_0171 Psyr_0171 Psyr_1598 Psyr_1598 Psyr_2940 Psyr_2940 Psyr_1292 Psyr_1292 Psyr_0994 Psyr_0994 Psyr_0509 Psyr_0509 Psyr_2445 Psyr_2445
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1125GGDEF domain protein. (509 aa)    
Predicted Functional Partners:
Psyr_1293
EAL:Response regulator receiver.
 
 0.836
Psyr_3942
Diguanylate cyclase/phosphodiesterase.
 
 
 0.823
Psyr_4221
Diguanylate cyclase/phosphodiesterase.
 
 0.820
Psyr_0171
EAL.
  
 0.799
Psyr_1598
Diguanylate cyclase/phosphodiesterase.
 
  
 0.745
Psyr_2940
PAS.
 
 0.636
Psyr_1292
Multi-sensor hybrid histidine kinase.
 
 
 0.630
Psyr_0994
Metal-dependent phosphohydrolase, HD subdomain protein.
 
 0.618
Psyr_0509
PAS:GGDEF.
 
 
0.578
Psyr_2445
Multi-sensor hybrid histidine kinase.
  
 
 0.572
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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