STRINGSTRING
Psyr_1133 Psyr_1133 Psyr_1134 Psyr_1134 Psyr_1132 Psyr_1132 Psyr_2038 Psyr_2038 Psyr_1135 Psyr_1135 Psyr_2036 Psyr_2036 Psyr_4801 Psyr_4801 Psyr_1131 Psyr_1131 Psyr_2039 Psyr_2039 Psyr_5005 Psyr_5005 Psyr_2497 Psyr_2497
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1133Fimbrial biogenesis outer membrane usher protein. (844 aa)    
Predicted Functional Partners:
Psyr_1134
Pili assembly chaperone.
 
 
 0.981
Psyr_1132
Pili assembly chaperone:Bacterial pili assembly chaperone.
 
 
 0.956
Psyr_2038
Pili assembly chaperone:Bacterial pili assembly chaperone.
 
 
 0.918
Psyr_1135
Conserved hypothetical protein.
  
 
 0.880
Psyr_2036
Fimbrial protein.
  
 
 0.809
Psyr_4801
Outer membrane efflux protein.
   
  
 0.771
Psyr_1131
Fimbrial protein.
  
 
 0.735
Psyr_2039
Fimbrial protein.
  
 
 0.673
Psyr_5005
Protein of unknown function DUF945.
  
     0.659
Psyr_2497
Lipoprotein, putative.
  
     0.649
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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