STRINGSTRING
Psyr_1250 Psyr_1250 bamB bamB hisS hisS Psyr_4117 Psyr_4117 HolA HolA Psyr_1246 Psyr_1246 Psyr_1247 Psyr_1247 Psyr_0396 Psyr_0396 der der ispG ispG Psyr_0059 Psyr_0059
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1250Conserved hypothetical protein. (213 aa)    
Predicted Functional Partners:
bamB
Quinoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.964
hisS
histidyl-tRNA synthetase.
  
    0.893
Psyr_4117
Stringent starvation protein B.
  
    0.749
HolA
DNA polymerase III, delta subunit.
  
     0.733
Psyr_1246
TPR repeat protein:TPR repeat protein.
 
     0.730
Psyr_1247
Conserved hypothetical protein.
 
    0.720
Psyr_0396
Sporulation related protein.
 
    0.687
der
Small GTP-binding protein protein domain:GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.685
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
    0.676
Psyr_0059
HemY, N-terminal:HemY, N-terminal:HemY, N-terminal.
 
     0.667
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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