STRINGSTRING
Psyr_1332 Psyr_1332 Psyr_1329 Psyr_1329 Psyr_2940 Psyr_2940 dapE dapE Psyr_1330 Psyr_1330 Psyr_1794 Psyr_1794 Psyr_1333 Psyr_1333 Psyr_1292 Psyr_1292 Psyr_3655 Psyr_3655 Psyr_4265 Psyr_4265 Psyr_4221 Psyr_4221
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1332Glycosyl transferase, family 2. (831 aa)    
Predicted Functional Partners:
Psyr_1329
Conserved hypothetical protein.
       0.611
Psyr_2940
PAS.
 
 
 0.578
dapE
Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
     
 0.576
Psyr_1330
23S rRNA m(1)G-745 methyltransferase.
       0.574
Psyr_1794
Amino acid adenylation.
  
 
 0.538
Psyr_1333
UBA/THIF-type NAD/FAD binding fold protein.
       0.534
Psyr_1292
Multi-sensor hybrid histidine kinase.
 
 
 0.477
Psyr_3655
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
  
 0.476
Psyr_4265
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
  
 0.476
Psyr_4221
Diguanylate cyclase/phosphodiesterase.
  
  
 0.452
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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