STRINGSTRING
Psyr_1400 Psyr_1400 Psyr_0531 Psyr_0531 Psyr_4232 Psyr_4232 Psyr_1627 Psyr_1627 Psyr_2028 Psyr_2028 Psyr_3284 Psyr_3284 Psyr_1597 Psyr_1597 proS proS Psyr_4849 Psyr_4849 Psyr_1329 Psyr_1329 Psyr_2095 Psyr_2095
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1400Outer membrane porin. (447 aa)    
Predicted Functional Partners:
Psyr_0531
LmbE-like protein.
  
     0.613
Psyr_4232
Protein of unknown function DUF541.
  
     0.588
Psyr_1627
Conserved hypothetical protein.
  
     0.536
Psyr_2028
Conserved hypothetical protein.
  
     0.517
Psyr_3284
SOS cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.
  
     0.516
Psyr_1597
Conserved hypothetical protein.
  
     0.513
proS
Prolyl-tRNA synthetase, bacterial; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and i [...]
       0.511
Psyr_4849
SdiA-regulated.
  
     0.501
Psyr_1329
Conserved hypothetical protein.
  
     0.490
Psyr_2095
Conserved TM helix.
  
     0.477
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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