Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_1290 | Psyr_1618 | Psyr_1290 | Psyr_1618 | Homoserine dehydrogenase. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.926 |
Psyr_1290 | Psyr_1660 | Psyr_1290 | Psyr_1660 | Homoserine dehydrogenase. | Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.776 |
Psyr_1290 | asd | Psyr_1290 | Psyr_1986 | Homoserine dehydrogenase. | Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.963 |
Psyr_1290 | dapA | Psyr_1290 | Psyr_1548 | Homoserine dehydrogenase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.930 |
Psyr_1290 | dapB | Psyr_1290 | Psyr_4193 | Homoserine dehydrogenase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.600 |
Psyr_1549 | Psyr_1550 | Psyr_1549 | Psyr_1550 | Lipoprotein, putative. | Beta-lactamase-like protein. | 0.795 |
Psyr_1549 | dapA | Psyr_1549 | Psyr_1548 | Lipoprotein, putative. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.776 |
Psyr_1549 | purC | Psyr_1549 | Psyr_1551 | Lipoprotein, putative. | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family. | 0.725 |
Psyr_1550 | Psyr_1549 | Psyr_1550 | Psyr_1549 | Beta-lactamase-like protein. | Lipoprotein, putative. | 0.795 |
Psyr_1550 | dapA | Psyr_1550 | Psyr_1548 | Beta-lactamase-like protein. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.746 |
Psyr_1550 | purC | Psyr_1550 | Psyr_1551 | Beta-lactamase-like protein. | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family. | 0.710 |
Psyr_1618 | Psyr_1290 | Psyr_1618 | Psyr_1290 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Homoserine dehydrogenase. | 0.926 |
Psyr_1618 | Psyr_1660 | Psyr_1618 | Psyr_1660 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.707 |
Psyr_1618 | asd | Psyr_1618 | Psyr_1986 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.933 |
Psyr_1618 | dapA | Psyr_1618 | Psyr_1548 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.928 |
Psyr_1618 | dapB | Psyr_1618 | Psyr_4193 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.983 |
Psyr_1618 | lysA | Psyr_1618 | Psyr_0182 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.485 |
Psyr_1660 | Psyr_1290 | Psyr_1660 | Psyr_1290 | Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family. | Homoserine dehydrogenase. | 0.776 |
Psyr_1660 | Psyr_1618 | Psyr_1660 | Psyr_1618 | Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.707 |
Psyr_1660 | dapA | Psyr_1660 | Psyr_1548 | Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.737 |
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