STRINGSTRING
Psyr_1741 Psyr_1741 Psyr_1740 Psyr_1740 Psyr_1739 Psyr_1739 Psyr_1737 Psyr_1737 Psyr_1738 Psyr_1738 Psyr_1742 Psyr_1742 Psyr_1736 Psyr_1736 Psyr_3906 Psyr_3906
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1741Conserved hypothetical protein. (90 aa)    
Predicted Functional Partners:
Psyr_1740
Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.
 
    0.948
Psyr_1739
Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.
 
    0.944
Psyr_1737
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
 
    0.938
Psyr_1738
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
 
    0.938
Psyr_1742
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; TC 3.A.1.1.-.
 
     0.903
Psyr_1736
Helix-turn-helix, Fis-type.
       0.444
Psyr_3906
Regulatory protein, DeoR.
 
     0.400
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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