STRINGSTRING
Psyr_1804 Psyr_1804 Psyr_1833 Psyr_1833 Psyr_1296 Psyr_1296 Psyr_0854 Psyr_0854 Psyr_0855 Psyr_0855 Psyr_0853 Psyr_0853 Psyr_0683 Psyr_0683 Psyr_1805 Psyr_1805 Psyr_4303 Psyr_4303 Psyr_2511 Psyr_2511 Psyr_0560 Psyr_0560
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1804Conserved hypothetical protein. (261 aa)    
Predicted Functional Partners:
Psyr_1833
Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.
  
     0.647
Psyr_1296
Conserved hypothetical protein.
  
     0.607
Psyr_0854
Conserved hypothetical protein.
  
     0.583
Psyr_0855
Conserved hypothetical protein.
  
     0.573
Psyr_0853
Conserved hypothetical protein.
  
     0.569
Psyr_0683
NUDIX hydrolase.
  
     0.561
Psyr_1805
Protein of unknown function DUF989.
 
     0.523
Psyr_4303
Protein of unknown function UPF0259.
  
     0.493
Psyr_2511
UvrD/REP helicase.
  
    0.476
Psyr_0560
Conserved hypothetical protein.
  
     0.471
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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