STRINGSTRING
Psyr_2070 Psyr_2070 Psyr_1271 Psyr_1271 Psyr_2111 Psyr_2111 Psyr_4361 Psyr_4361 Psyr_2069 Psyr_2069 Psyr_2068 Psyr_2068 Psyr_3195 Psyr_3195 Psyr_2067 Psyr_2067
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2070ErfK/YbiS/YcfS/YnhG. (321 aa)    
Predicted Functional Partners:
Psyr_1271
ErfK/YbiS/YcfS/YnhG.
 
  
 0.687
Psyr_2111
Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
     
 0.589
Psyr_4361
Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; Belongs to the peptidase S11 family.
    
 0.583
Psyr_2069
Conserved hypothetical protein.
       0.558
Psyr_2068
Arylesterase.
     
 0.521
Psyr_3195
NolW-like protein.
  
     0.458
Psyr_2067
ABC transporter.
  
    0.411
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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