STRINGSTRING
Psyr_2084 Psyr_2084 prpB prpB Psyr_2675 Psyr_2675 Psyr_2086 Psyr_2086 Psyr_2088 Psyr_2088 Psyr_2087 Psyr_2087 Psyr_2081 Psyr_2081 Psyr_2082 Psyr_2082 Psyr_2083 Psyr_2083
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2084Transcriptional regulator, GntR family. (239 aa)    
Predicted Functional Partners:
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.847
Psyr_2675
Transcriptional regulator, GntR family.
  
  
 0.668
Psyr_2086
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
  
 0.548
Psyr_2088
2-methylaconitate cis-trans isomerase.
 
  
 0.541
Psyr_2087
Aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming).
 
  
 0.520
Psyr_2081
Conserved hypothetical protein.
       0.458
Psyr_2082
Membrane protein, putative.
       0.458
Psyr_2083
Protein of unknown function DUF785.
       0.447
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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