STRINGSTRING
Psyr_2097 Psyr_2097 Psyr_2095 Psyr_2095 tolB tolB Psyr_2096 Psyr_2096 Psyr_1352 Psyr_1352 Psyr_0531 Psyr_0531 Psyr_3759 Psyr_3759 Psyr_1117 Psyr_1117 Psyr_1597 Psyr_1597 Psyr_0763 Psyr_0763 Psyr_0555 Psyr_0555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2097Thrombospondin type 3 repeat:OmpA/MotB:OmpF. (344 aa)    
Predicted Functional Partners:
Psyr_2095
Conserved TM helix.
 
   
 0.641
tolB
TolB, N-terminal:TolB, N-terminal; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.640
Psyr_2096
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.633
Psyr_1352
Outer membrane protein (OmpH-like).
 
 
 0.628
Psyr_0531
LmbE-like protein.
  
     0.598
Psyr_3759
Conserved hypothetical protein.
  
   
 0.575
Psyr_1117
Porin, OprB family; TC 1.B.19.
     
 0.561
Psyr_1597
Conserved hypothetical protein.
  
   
 0.560
Psyr_0763
Porin, LamB type.
     
 0.555
Psyr_0555
Protein of unknown function DUF330.
  
     0.534
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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