STRINGSTRING
Psyr_2121 Psyr_2121 Psyr_2123 Psyr_2123 Psyr_2122 Psyr_2122 Psyr_3624 Psyr_3624 Psyr_3236 Psyr_3236 Psyr_1800 Psyr_1800 Psyr_2531 Psyr_2531 Psyr_2536 Psyr_2536 Psyr_1558 Psyr_1558 Psyr_2938 Psyr_2938 Psyr_2120 Psyr_2120
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2121Regulatory protein, LysR:LysR, substrate-binding protein; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
Psyr_2123
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
   
 0.822
Psyr_2122
Protocatechuate 3,4-dioxygenase, beta subunit.
 
   
 0.804
Psyr_3624
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.701
Psyr_3236
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.694
Psyr_1800
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.688
Psyr_2531
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.671
Psyr_2536
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.658
Psyr_1558
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.644
Psyr_2938
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.643
Psyr_2120
Conserved hypothetical protein.
     
 0.608
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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