STRINGSTRING
Psyr_2123 Psyr_2123 Psyr_2122 Psyr_2122 Psyr_2125 Psyr_2125 Psyr_3500 Psyr_3500 Psyr_2126 Psyr_2126 Psyr_2121 Psyr_2121 Psyr_2130 Psyr_2130 hmgA hmgA Psyr_4169 Psyr_4169 Psyr_2124 Psyr_2124 Psyr_3839 Psyr_3839
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2123Protocatechuate 3,4-dioxygenase, alpha subunit. (200 aa)    
Predicted Functional Partners:
Psyr_2122
Protocatechuate 3,4-dioxygenase, beta subunit.
 
0.998
Psyr_2125
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.988
Psyr_3500
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.981
Psyr_2126
4-carboxymuconolactone decarboxylase.
 
  
 0.915
Psyr_2121
Regulatory protein, LysR:LysR, substrate-binding protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.822
Psyr_2130
4-hydroxyphenylpyruvate dioxygenase.
 
   
 0.820
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
   
 0.762
Psyr_4169
4-carboxymuconolactone decarboxylase.
 
  
 0.699
Psyr_2124
Benzoate transport.
 
   
 0.690
Psyr_3839
Type III helper protein HopAK1.
      
 0.674
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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