STRINGSTRING
Psyr_2301 Psyr_2301 Psyr_2303 Psyr_2303 Psyr_2302 Psyr_2302 Psyr_2300 Psyr_2300 Psyr_2299 Psyr_2299 Psyr_1794 Psyr_1794 Psyr_1705 Psyr_1705
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2301Short-chain dehydrogenase/reductase SDR. (246 aa)    
Predicted Functional Partners:
Psyr_2303
UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.952
Psyr_2302
FAD linked oxidase, N-terminal.
 
  
 0.951
Psyr_2300
Conserved hypothetical protein 374.
 
     0.897
Psyr_2299
Hypothetical protein.
       0.619
Psyr_1794
Amino acid adenylation.
  
 
 0.558
Psyr_1705
Amino acid adenylation.
  
 
 0.428
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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