STRINGSTRING
Psyr_2350 Psyr_2350 Psyr_2807 Psyr_2807 Psyr_0472 Psyr_0472 Psyr_2351 Psyr_2351 LigD LigD Psyr_0504 Psyr_0504 Psyr_1860 Psyr_1860 Psyr_3354 Psyr_3354 Psyr_2101 Psyr_2101 Psyr_1368 Psyr_1368
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2350Protein of unknown function UPF0025. (152 aa)    
Predicted Functional Partners:
Psyr_2807
NinB.
      
 0.760
Psyr_0472
Ham1-like protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.751
Psyr_2351
tRNA synthetase, class-II (G, H, P and S).
  
    0.591
LigD
Bifunctional non-homologous end joining protein LigD; ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module.
  
 
 
 0.555
Psyr_0504
Conserved domain protein.
    
 
 0.528
Psyr_1860
Ankyrin.
    
 
 0.528
Psyr_3354
Ankyrin.
    
 
 0.528
Psyr_2101
Protein kinase.
  
  
 0.481
Psyr_1368
Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde.
  
  
 0.452
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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